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pyXenium 0.4.6 - Home pyXenium 0.4.6 - Home
  • Installation and quickstart
  • Tutorials
  • User guide
  • Workflows
  • API reference
  • Changelog
  • GitHub
  • PyPI
  • Read the Docs
  • Installation and quickstart
  • Tutorials
  • User guide
  • Workflows
  • API reference
  • Changelog
  • GitHub
  • PyPI
  • Read the Docs

Section Navigation

  • Nine-feature overview
  • Multimodal overview
  • Xenium data loading
  • Partial loading
  • Protein-gene correlation
  • Contour-aware density profiling
  • Contour-GMI guide
  • User guide

User guide#

  • Nine-feature overview
  • Multimodal overview
  • Xenium data loading
  • Partial loading
  • Protein-gene correlation
  • Contour-aware density profiling
  • Contour-GMI guide

The user guide is organized around the package’s canonical surfaces: low-level Xenium I/O, standardized multimodal preparation, geometry-aware downstream analysis, and contour-level GMI inference.

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