pyXenium.cci#
The cell-cell interaction tutorials collect the Atera WTA breast workflows for topology-supported CCI discovery, including ligand-receptor-resource mode, and whole-dataset method benchmarking.
Basic Atera Cell-Cell Interaction Workflow
Use precomputed topology anchors and cell-type expression support to interpret sender-receiver hypotheses across tumor, stromal, immune, and vascular compartments.
Whole-Dataset CCI Benchmarking
Compare PDC full common-db runs for pyXenium, CellPhoneDB, LARIS, LIANA+, SpatialDM, and stLearn, with canonical Atera axis recovery and method interpretation.