pyXenium.gmi#
The GMI tutorials collect contour-native sparse modeling and supervised spatial gene module discovery for the Atera WTA breast S1/S5 contour workflow.
Contour-GMI S1/S5
Use S1/S5 contours as samples for GMI main-effect, interaction, control, and heterogeneity analyses.
Spatial gene modules
Turn completed contour-GMI runs into supervised spatial gene modules with module scores, curated pathway overlaps, and contour score maps.