pyXenium.contour

add_contours_from_geojson	Import polygon contours from a GeoJSON file into XeniumSlide.shapes.
build_contour_feature_table	Build a contour-centric multimodal feature table.
compare_contour_cell_composition	Compare cell-type proportions and quantities across contour groups.
compare_contour_de	Compare contour groups with contour-level pseudobulk expression.
compare_contour_transcript_de	Compare contour groups with transcript-count pseudobulk normalization.
expand_contours	Expand an existing contour layer into a derived contour layer.
generate_barrier_contour_shells	Generate per-contour shells whose outward rings exclude other contours.
generate_contour_shells	Generate independent inward/outward signed-distance shells for each contour.
generate_xenium_explorer_annotations	Generate Xenium Explorer-compatible structure annotations via HistoSeg.
ring_density	Compute inward/outward ring density around contour annotations in XeniumSlide.
smooth_density_by_distance	Compute a continuous signed-distance density profile around contour annotations.
summarize_contour_composition	Summarize cell-type and gene/program composition inside each contour.
summarize_contour_topology	Summarize contour boundary-neighbor and enclosure relationships.