pyXenium.mechanostress.AxisStrengthConfig

class AxisStrengthConfig(er_threshold=2.0, radii_um=(5.0, 10.0, 20.0, 30.0, 50.0, 75.0, 100.0, 150.0, 200.0, 300.0, 400.0, 500.0), groupby=('cluster',), local_k=15, angle_col='axis_angle_radians', x_col='centroid_x', y_col='centroid_y', cell_query=None)

Bases: object

Configuration for axial orientation and ANE density analysis.

Parameters:

• er_threshold (float)

• radii_um (tuple[float, ...])

• groupby (tuple[str, ...])

• local_k (int)

• angle_col (str)

• x_col (str)

• y_col (str)

• cell_query (str | None)

__init__(er_threshold=2.0, radii_um=(5.0, 10.0, 20.0, 30.0, 50.0, 75.0, 100.0, 150.0, 200.0, 300.0, 400.0, 500.0), groupby=('cluster',), local_k=15, angle_col='axis_angle_radians', x_col='centroid_x', y_col='centroid_y', cell_query=None)

Parameters:

• er_threshold (float)

• radii_um (tuple[float, ...])

• groupby (tuple[str, ...])

• local_k (int)

• angle_col (str)

• x_col (str)

• y_col (str)

• cell_query (str | None)

Return type:

None

Methods

__init__([er_threshold, radii_um, groupby, ...])
copy_with(**updates)
to_dict()

Attributes

angle_col
cell_query
er_threshold
groupby
local_k
radii_um
x_col
y_col

er_threshold: float = 2.0

radii_um: tuple[float, ...] = (5.0, 10.0, 20.0, 30.0, 50.0, 75.0, 100.0, 150.0, 200.0, 300.0, 400.0, 500.0)

groupby: tuple[str, ...] = ('cluster',)

local_k: int = 15

angle_col: str = 'axis_angle_radians'

x_col: str = 'centroid_x'

y_col: str = 'centroid_y'

cell_query: str | None = None

to_dict()

Return type:

dict[str, Any]

copy_with(**updates)

Parameters:

updates (Any)

Return type:

AxisStrengthConfig