pyXenium.mechanostress.TumorStromaGrowthConfig

class TumorStromaGrowthConfig(annotation_col='Annotation', tumor_label='Tumor', stroma_label='Stromal', x_col='x_centroid', y_col='y_centroid', cell_id_col='cell_id', method='delaunay_hop')

Bases: object

Configuration for tumor-stroma growth pattern classification.

Parameters:

• annotation_col (str)

• tumor_label (str)

• stroma_label (str)

• x_col (str)

• y_col (str)

• cell_id_col (str)

• method (str)

__init__(annotation_col='Annotation', tumor_label='Tumor', stroma_label='Stromal', x_col='x_centroid', y_col='y_centroid', cell_id_col='cell_id', method='delaunay_hop')

Parameters:

• annotation_col (str)

• tumor_label (str)

• stroma_label (str)

• x_col (str)

• y_col (str)

• cell_id_col (str)

• method (str)

Return type:

None

Methods

__init__([annotation_col, tumor_label, ...])
copy_with(**updates)
to_dict()

Attributes

annotation_col
cell_id_col
method
stroma_label
tumor_label
x_col
y_col

annotation_col: str = 'Annotation'

tumor_label: str = 'Tumor'

stroma_label: str = 'Stromal'

x_col: str = 'x_centroid'

y_col: str = 'y_centroid'

cell_id_col: str = 'cell_id'

method: str = 'delaunay_hop'

to_dict()

Return type:

dict[str, Any]

copy_with(**updates)

Parameters:

updates (Any)

Return type:

TumorStromaGrowthConfig