pyXenium.mechanostress.MechanostressConfig

class MechanostressConfig(axis=<factory>, tumor_stroma=<factory>, polarity=<factory>, coupling_genes=(), sample_id=None)

Bases: object

Configuration for the integrated mechanostress workflow.

Parameters:

• axis (AxisStrengthConfig)

• tumor_stroma (TumorStromaGrowthConfig)

• polarity (PolarityConfig)

• coupling_genes (tuple[str, ...])

• sample_id (str | None)

__init__(axis=<factory>, tumor_stroma=<factory>, polarity=<factory>, coupling_genes=(), sample_id=None)

Parameters:

• axis (AxisStrengthConfig)

• tumor_stroma (TumorStromaGrowthConfig)

• polarity (PolarityConfig)

• coupling_genes (tuple[str, ...])

• sample_id (str | None)

Return type:

None

Methods

__init__([axis, tumor_stroma, polarity, ...])
copy_with(**updates)
to_dict()

Attributes

coupling_genes
sample_id
axis
tumor_stroma
polarity

axis: AxisStrengthConfig

tumor_stroma: TumorStromaGrowthConfig

polarity: PolarityConfig

coupling_genes: tuple[str, ...] = ()

sample_id: str | None = None

to_dict()

Return type:

dict[str, Any]

copy_with(**updates)

Parameters:

updates (Any)

Return type:

MechanostressConfig