pyXenium.io

read_xenium
write_xenium
read_slide
load_anndata_from_partial
export_xenium_to_slide_zarr	Export wrapper that writes pyXenium's own XeniumSlide Zarr schema.
load_xenium_gene_protein	Deprecated compatibility wrapper for pyXenium.multimodal.load_rna_protein_anndata().
XeniumSlide
XeniumImage

XeniumSlide is pyXenium’s independent in-memory and on-disk slide container. Its design acknowledges the broader SpatialData ecosystem and Marconato et al., 2024, but pyXenium core slide I/O is fully rewritten and does not depend on spatialdata at runtime.