pyXenium.mechanostress.estimate_cell_axes

estimate_cell_axes(boundaries, *, cell_id_col='cell_id', x_col='x', y_col='y', vertex_id_col='vertex_id', min_vertices=3)

Estimate per-cell axial orientation and elongation ratio from boundary vertices.

Parameters:

• boundaries (DataFrame)

• cell_id_col (str)

• x_col (str)

• y_col (str)

• vertex_id_col (str)

• min_vertices (int)

Return type:

DataFrame