pyXenium.multimodal.run_contour_boundary_ecology_pilot

run_contour_boundary_ecology_pilot(sdata_or_path, *, contour_key, output_dir=None, embedding_backend=None, pathology_backends=None, neighbor_k=6, include_pathomics=True, program_library='tumor_boundary_v1', precomputed_edge_gradients=None, precomputed_feature_table=None)

Parameters:

• sdata_or_path (XeniumSlide | str | Path)

• contour_key (str)

• output_dir (str | Path | None)

• embedding_backend (Any)

• pathology_backends (Any)

• neighbor_k (int)

• include_pathomics (bool)

• program_library (str | dict[str, Any])

• precomputed_edge_gradients (DataFrame | None)

• precomputed_feature_table (dict[str, Any] | None)

Return type:

dict[str, Any]