pyXenium.multimodal.run_renal_immune_resistance_pilot#

run_renal_immune_resistance_pilot(*, base_path, prefer='auto', sample_id='renal_ffpe_public_10x', n_neighbors=15, region_bins=24, output_json=None, output_dir=None, write_h5ad=None, top_n=10, manuscript_mode=False, manuscript_root='manuscript', export_figures=True)#
Parameters:

  • base_path (str)

  • prefer (str)

  • sample_id (str)

  • n_neighbors (int)

  • region_bins (int)

  • output_json (str | None)

  • output_dir (str | None)

  • write_h5ad (str | None)

  • top_n (int)

  • manuscript_mode (bool)

  • manuscript_root (str)

  • export_figures (bool)

Return type:

dict