pyXenium.mechanostress.compute_cell_polarity#

compute_cell_polarity(*, cell_boundaries=None, nucleus_boundaries=None, cell_table=None, cell_id_col='cell_id', offset_norm_threshold=0.30)#

Compute cell polarity from cell and nucleus centroid offsets.

Parameters:

  • cell_boundaries (DataFrame | None)

  • nucleus_boundaries (DataFrame | None)

  • cell_table (DataFrame | None)

  • cell_id_col (str)

  • offset_norm_threshold (float)

Return type:

DataFrame