pyXenium.contour.ring_density

ring_density(sdata, *, contour_key, target='transcripts', contour_query=None, target_query=None, feature_key='gene_name', feature_values=None, inward, outward, ring_width)

Compute inward/outward ring density around contour annotations in XeniumSlide.

Parameters:

• sdata (XeniumSlide)

• contour_key (str)

• target (str)

• contour_query (str | None)

• target_query (str | None)

• feature_key (str)

• feature_values (str | Sequence[str] | None)

• inward (float)

• outward (float)

• ring_width (float)

Return type:

DataFrame