pyXenium.gmi.discover_gmi_modules#

discover_gmi_modules(gmi_output_dir=None, *, dataset=None, output_dir=None, config=None, main_effects=None, interaction_effects=None, stability=None, predictions=None)#

Discover supervised spatial gene modules from existing contour-GMI artifacts.

Parameters:

  • gmi_output_dir (str | Path | None)

  • dataset (ContourGmiDataset | None)

  • output_dir (str | Path | None)

  • config (GmiModuleConfig | None)

  • main_effects (DataFrame | None)

  • interaction_effects (DataFrame | None)

  • stability (DataFrame | None)

  • predictions (DataFrame | None)

Return type:

GmiModuleResult

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