pyXenium.multimodal.score_immune_resistance_program

score_immune_resistance_program(adata, *, discordance_result=None, niche_result=None, niche_key='spatial_niche', state_key='joint_cell_state', prefix='immune_resistance', region_bins=24, n_neighbors=15, resistant_niches=DEFAULT_RESISTANT_NICHES)

Score decoupled immune-resistance programs and ablations.

Parameters:

• adata (AnnData)

• discordance_result (Mapping[str, DataFrame] | None)

• niche_result (Mapping[str, DataFrame] | None)

• niche_key (str)

• state_key (str)

• prefix (str)

• region_bins (int)

• n_neighbors (int)

• resistant_niches (Sequence[str])

Return type:

dict[str, DataFrame | dict[str, object]]