pyXenium.mechanostress.classify_tumor_stroma_growth#

classify_tumor_stroma_growth(cell_table, *, annotation_col='Annotation', tumor_label='Tumor', stroma_label='Stromal', x_col='x_centroid', y_col='y_centroid', method='delaunay_hop')#

Classify tumor cells as infiltrative or expanding from tumor-stroma geometry.

Parameters:
  • cell_table (DataFrame)

  • annotation_col (str)

  • tumor_label (str)

  • stroma_label (str)

  • x_col (str)

  • y_col (str)

  • method (str)

Return type:

DataFrame