pyXenium.mechanostress.PolarityConfig#

class PolarityConfig(offset_norm_threshold=0.3, cell_id_col='cell_id')#

Bases: object

Configuration for cell/nucleus centroid polarity analysis.

Parameters:
  • offset_norm_threshold (float)

  • cell_id_col (str)

__init__(offset_norm_threshold=0.3, cell_id_col='cell_id')#
Parameters:
  • offset_norm_threshold (float)

  • cell_id_col (str)

Return type:

None

Methods

__init__([offset_norm_threshold, cell_id_col])

copy_with(**updates)

to_dict()

Attributes

offset_norm_threshold: float = 0.3#
cell_id_col: str = 'cell_id'#
to_dict()#
Return type:

dict[str, Any]

copy_with(**updates)#
Parameters:

updates (Any)

Return type:

PolarityConfig