pyXenium.gmi.GmiModuleResult

class GmiModuleResult(output_dir, spatial_modules, module_features, module_scores, module_enrichment, module_interactions, module_spatial_autocorr, effect_graph_nodes, effect_graph_edges, summary, files)

Bases: object

Artifacts from supervised GMI spatial module discovery.

Parameters:

• output_dir (Path)

• spatial_modules (DataFrame)

• module_features (DataFrame)

• module_scores (DataFrame)

• module_enrichment (DataFrame)

• module_interactions (DataFrame)

• module_spatial_autocorr (DataFrame)

• effect_graph_nodes (DataFrame)

• effect_graph_edges (DataFrame)

• summary (dict[str, Any])

• files (dict[str, str])

__init__(output_dir, spatial_modules, module_features, module_scores, module_enrichment, module_interactions, module_spatial_autocorr, effect_graph_nodes, effect_graph_edges, summary, files)

Parameters:

• output_dir (Path)

• spatial_modules (DataFrame)

• module_features (DataFrame)

• module_scores (DataFrame)

• module_enrichment (DataFrame)

• module_interactions (DataFrame)

• module_spatial_autocorr (DataFrame)

• effect_graph_nodes (DataFrame)

• effect_graph_edges (DataFrame)

• summary (dict[str, Any])

• files (dict[str, str])

Return type:

None

Methods

__init__(output_dir, spatial_modules, ...)

Attributes

output_dir
spatial_modules
module_features
module_scores
module_enrichment
module_interactions
module_spatial_autocorr
effect_graph_nodes
effect_graph_edges
summary
files

output_dir: Path

spatial_modules: DataFrame

module_features: DataFrame

module_scores: DataFrame

module_enrichment: DataFrame

module_interactions: DataFrame

module_spatial_autocorr: DataFrame

effect_graph_nodes: DataFrame

effect_graph_edges: DataFrame

summary: dict[str, Any]

files: dict[str, str]