pyXenium.mechanostress.run_mechanostress_cohort

run_mechanostress_cohort(cohort_root, *, output_dir, config=None, sample_glob='*', annotation_glob='*_cell_clusters_with_annotation_and_coord.csv', prefer='auto', sample_limit=None, fail_fast=False)

Run the mechanostress workflow across sample directories and write cohort summaries.

Parameters:

• cohort_root (str | Path)

• output_dir (str | Path)

• config (MechanostressConfig | None)

• sample_glob (str)

• annotation_glob (str | None)

• prefer (str)

• sample_limit (int | None)

• fail_fast (bool)

Return type:

MechanostressCohortResult