pyXenium.mechanostress.run_mechanostress_workflow

run_mechanostress_workflow(sdata=None, *, base_path=None, cell_table=None, config=None, output_dir=None)

Run the integrated mechanostress workflow on a XeniumSlide object or Xenium export path.

Parameters:

• sdata (XeniumSlide | None)

• base_path (str | Path | None)

• cell_table (DataFrame | str | Path | None)

• config (MechanostressConfig | None)

• output_dir (str | Path | None)

Return type:

MechanostressResult